IL_6HCF_170

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAUA*UAAUU

Length

9 nucleotides

Bulged bases

6HCF|1|A1|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_170 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3099

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6HCF|1|A1|A|528
6HCF|1|A1|A|529
6HCF|1|A1|U|530
6HCF|1|A1|A|531
*
6HCF|1|A1|U|553
6HCF|1|A1|A|554
6HCF|1|A1|A|555
6HCF|1|A1|U|556
6HCF|1|A1|U|557

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain f1

40S ribosomal protein S30