IL_6HCF_171

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACU*AGGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|G|535
6HCF|1|A1|A|536
6HCF|1|A1|C|537
6HCF|1|A1|U|538
*
6HCF|1|A1|A|545
6HCF|1|A1|G|546
6HCF|1|A1|G|547
6HCF|1|A1|C|548
6HCF|1|A1|C|549

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain f1

40S ribosomal protein S30