IL_6HCF_187

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6HCF|1|A1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_187 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1794

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6HCF|1|A1|G|924
6HCF|1|A1|G|925
6HCF|1|A1|A|926
6HCF|1|A1|C|927
*
6HCF|1|A1|G|1014
6HCF|1|A1|U|1015
6HCF|1|A1|U|1016
6HCF|1|A1|U|1017
6HCF|1|A1|U|1018

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

uS15

Chain c1

40S ribosomal protein S27