IL_6HCF_188

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCCGGGG*CAAGAAUG

Length

17 nucleotides

Bulged bases

6HCF|1|A1|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|C|927
6HCF|1|A1|G|928
6HCF|1|A1|G|929
6HCF|1|A1|C|930
6HCF|1|A1|C|931
6HCF|1|A1|G|932
6HCF|1|A1|G|933
6HCF|1|A1|G|934
6HCF|1|A1|G|935
*
6HCF|1|A1|C|1007
6HCF|1|A1|A|1008
6HCF|1|A1|A|1009
6HCF|1|A1|G|1010
6HCF|1|A1|A|1011
6HCF|1|A1|A|1012
6HCF|1|A1|U|1013
6HCF|1|A1|G|1014

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S3a

Chain O1

uS15

Chain b1

eS26

Chain c1

40S ribosomal protein S27

Chain c3

eL30