IL_6HCF_212

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_212 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1284

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6HCF|1|A1|G|1604
6HCF|1|A1|G|1605
6HCF|1|A1|G|1606
6HCF|1|A1|A|1607
6HCF|1|A1|U|1608
6HCF|1|A1|C|1609
6HCF|1|A1|G|1610
*
6HCF|1|A1|C|1629
6HCF|1|A1|A|1630
6HCF|1|A1|U|1631
6HCF|1|A1|G|1632
6HCF|1|A1|A|1633
6HCF|1|A1|A|1634
6HCF|1|A1|C|1635

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain T1

uS13

Chain U1

eS19