IL_6HCF_221
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_221 not in the Motif Atlas
- Geometric match to IL_7A0S_056
- Geometric discrepancy: 0.3262
- The information below is about IL_7A0S_056
- Detailed Annotation
- Double sheared with near cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6HCF|1|A1|G|1732
6HCF|1|A1|U|1733
6HCF|1|A1|G|1734
6HCF|1|A1|A|1735
6HCF|1|A1|G|1736
*
6HCF|1|A1|C|1798
6HCF|1|A1|G|1799
6HCF|1|A1|A|1800
6HCF|1|A1|A|1801
6HCF|1|A1|C|1802
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- eS8
- Chain W3
- eL24
Coloring options: