IL_6HCF_228

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUCCCC*GCGGGAAAUGU

Length

17 nucleotides

Bulged bases

6HCF|1|52|C|143, 6HCF|1|52|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|A|121
6HCF|1|52|U|122
6HCF|1|52|C|123
6HCF|1|52|C|124
6HCF|1|52|C|125
6HCF|1|52|C|126
*
6HCF|1|52|G|142
6HCF|1|52|C|143
6HCF|1|52|G|144
6HCF|1|52|G|145
6HCF|1|52|G|146
6HCF|1|52|A|147
6HCF|1|52|A|148
6HCF|1|52|A|149
6HCF|1|52|U|150
6HCF|1|52|G|151
6HCF|1|52|U|152

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain X3

uL23

Chain h3

uL29