IL_6HCF_229

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAGACCCACUCCCCGG*CCGGGCCCGGGUCUU

Length

31 nucleotides

Bulged bases

6HCF|1|52|U|171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|A|162
6HCF|1|52|A|163
6HCF|1|52|G|164
6HCF|1|52|A|165
6HCF|1|52|C|166
6HCF|1|52|C|167
6HCF|1|52|C|168
6HCF|1|52|A|169
6HCF|1|52|C|170
6HCF|1|52|U|171
6HCF|1|52|C|172
6HCF|1|52|C|173
6HCF|1|52|C|174
6HCF|1|52|C|175
6HCF|1|52|G|176
6HCF|1|52|G|177
*
6HCF|1|52|C|259
6HCF|1|52|C|260
6HCF|1|52|G|261
6HCF|1|52|G|262
6HCF|1|52|G|263
6HCF|1|52|C|264
6HCF|1|52|C|265
6HCF|1|52|C|266
6HCF|1|52|G|267
6HCF|1|52|G|268
6HCF|1|52|G|269
6HCF|1|52|U|270
6HCF|1|52|C|271
6HCF|1|52|U|272
6HCF|1|52|U|273

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain h3

uL29