IL_6HCF_231

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGUGGGGUCCGCG*UCGGCUACCCACCC

Length

28 nucleotides

Bulged bases

6HCF|1|52|C|449, 6HCF|1|52|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|437
6HCF|1|52|G|438
6HCF|1|52|G|439
6HCF|1|52|U|440
6HCF|1|52|G|441
6HCF|1|52|G|442
6HCF|1|52|G|443
6HCF|1|52|G|444
6HCF|1|52|U|445
6HCF|1|52|C|446
6HCF|1|52|C|447
6HCF|1|52|G|448
6HCF|1|52|C|449
6HCF|1|52|G|450
*
6HCF|1|52|U|1297
6HCF|1|52|C|1298
6HCF|1|52|G|1299
6HCF|1|52|G|1300
6HCF|1|52|C|1301
6HCF|1|52|U|1302
6HCF|1|52|A|1303
6HCF|1|52|C|1304
6HCF|1|52|C|1305
6HCF|1|52|C|1306
6HCF|1|52|A|1307
6HCF|1|52|C|1308
6HCF|1|52|C|1309
6HCF|1|52|C|1310

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain O3

uL13

Chain e3

eL32

Chain f3

eL33