IL_6HCF_233

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUCCGGCCGUG*CCGGCGACCGGC

Length

24 nucleotides

Bulged bases

6HCF|1|52|U|492, 6HCF|1|52|G|666, 6HCF|1|52|A|667, 6HCF|1|52|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|482
6HCF|1|52|G|483
6HCF|1|52|U|484
6HCF|1|52|C|485
6HCF|1|52|C|486
6HCF|1|52|G|487
6HCF|1|52|G|488
6HCF|1|52|C|489
6HCF|1|52|C|490
6HCF|1|52|G|491
6HCF|1|52|U|492
6HCF|1|52|G|493
*
6HCF|1|52|C|661
6HCF|1|52|C|662
6HCF|1|52|G|663
6HCF|1|52|G|664
6HCF|1|52|C|665
6HCF|1|52|G|666
6HCF|1|52|A|667
6HCF|1|52|C|668
6HCF|1|52|C|669
6HCF|1|52|G|670
6HCF|1|52|G|671
6HCF|1|52|C|672

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28