IL_6HCF_246

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUCU*ACC

Length

8 nucleotides

Bulged bases

6HCF|1|52|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_246 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3806

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6HCF|1|52|G|1752
6HCF|1|52|G|1753
6HCF|1|52|U|1754
6HCF|1|52|C|1755
6HCF|1|52|U|1756
*
6HCF|1|52|A|1776
6HCF|1|52|C|1777
6HCF|1|52|C|1778

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10