IL_6HCF_248

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCGCCCGAUGC*GGGCC

Length

17 nucleotides

Bulged bases

6HCF|1|52|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|1909
6HCF|1|52|G|1910
6HCF|1|52|C|1911
6HCF|1|52|G|1912
6HCF|1|52|C|1913
6HCF|1|52|C|1914
6HCF|1|52|C|1915
6HCF|1|52|G|1916
6HCF|1|52|A|1917
6HCF|1|52|U|1918
6HCF|1|52|G|1919
6HCF|1|52|C|1920
*
6HCF|1|52|G|2063
6HCF|1|52|G|2064
6HCF|1|52|G|2065
6HCF|1|52|C|2066
6HCF|1|52|C|2067

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 72

5S ribosomal RNA; 5S rRNA

Chain F3

uL30

Chain O3

uL13

Chain S3

eL20

Chain f3

eL33