IL_6HCF_251
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAAC*GAAC
- Length
- 10 nucleotides
- Bulged bases
- 6HCF|1|52|A|2428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_251 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.3544
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6HCF|1|52|G|2414
6HCF|1|52|U|2415
6HCF|1|52|G|2416
6HCF|1|52|A|2417
6HCF|1|52|A|2418
6HCF|1|52|C|2419
*
6HCF|1|52|G|2427
6HCF|1|52|A|2428
6HCF|1|52|A|2429
6HCF|1|52|C|2430
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain P3
- uL22
- Chain R3
- eL19
- Chain l3
- eL39
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