IL_6HCF_259

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCGGG*CUACUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|3893
6HCF|1|52|A|3894
6HCF|1|52|G|3895
6HCF|1|52|C|3896
6HCF|1|52|G|3897
6HCF|1|52|G|3898
6HCF|1|52|G|3899
*
6HCF|1|52|C|4562
6HCF|1|52|U|4563
6HCF|1|52|A|4564
6HCF|1|52|C|4565
6HCF|1|52|U|4566
6HCF|1|52|G|4567

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13

Chain P3

uL22