IL_6HCF_260

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACAUGA*UGAUCGU

Length

14 nucleotides

Bulged bases

6HCF|1|52|A|3947, 6HCF|1|52|C|3948

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|3946
6HCF|1|52|A|3947
6HCF|1|52|C|3948
6HCF|1|52|A|3949
6HCF|1|52|U|3950
6HCF|1|52|G|3951
6HCF|1|52|A|3952
*
6HCF|1|52|U|4060
6HCF|1|52|G|4061
6HCF|1|52|A|4062
6HCF|1|52|U|4063
6HCF|1|52|C|4064
6HCF|1|52|G|4065
6HCF|1|52|U|4066

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain i3

60S ribosomal protein L36

Chain u3

uL1