IL_6HCF_262
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGGGGGCGAGCCGGGCUCUCGCUUCUGGCGCCAAG*CGACCC
- Length
- 42 nucleotides
- Bulged bases
- 6HCF|1|52|C|4101, 6HCF|1|52|C|4116, 6HCF|1|52|U|4117, 6HCF|1|52|U|4118, 6HCF|1|52|G|4121, 6HCF|1|52|G|4122, 6HCF|1|52|C|4123, 6HCF|1|52|G|4124, 6HCF|1|52|A|4157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|4089
6HCF|1|52|G|4090
6HCF|1|52|G|4091
6HCF|1|52|G|4092
6HCF|1|52|G|4093
6HCF|1|52|G|4094
6HCF|1|52|G|4095
6HCF|1|52|C|4096
6HCF|1|52|G|4097
6HCF|1|52|A|4098
6HCF|1|52|G|4099
6HCF|1|52|C|4100
6HCF|1|52|C|4101
6HCF|1|52|G|4107
6HCF|1|52|G|4108
6HCF|1|52|G|4109
6HCF|1|52|C|4110
6HCF|1|52|U|4111
6HCF|1|52|C|4112
6HCF|1|52|U|4113
6HCF|1|52|C|4114
6HCF|1|52|G|4115
6HCF|1|52|C|4116
6HCF|1|52|U|4117
6HCF|1|52|U|4118
6HCF|1|52|C|4119
6HCF|1|52|U|4120
6HCF|1|52|G|4121
6HCF|1|52|G|4122
6HCF|1|52|C|4123
6HCF|1|52|G|4124
6HCF|1|52|C|4125
6HCF|1|52|C|4126
6HCF|1|52|A|4127
6HCF|1|52|A|4128
6HCF|1|52|G|4129
*
6HCF|1|52|C|4155
6HCF|1|52|G|4156
6HCF|1|52|A|4157
6HCF|1|52|C|4158
6HCF|1|52|C|4159
6HCF|1|52|C|4160
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A3
- Ribosomal protein L8
- Chain C1
- 40S ribosomal protein S3a
- Chain G3
- eL8
- Chain Z3
- 60S ribosomal protein L27
- Chain c3
- eL30
- Chain g3
- eL34
- Chain p3
- eL43
Coloring options: