IL_6HCF_266

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCCAUG*CAGGCGGAA

Length

16 nucleotides

Bulged bases

6HCF|1|52|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|U|4580
6HCF|1|52|G|4581
6HCF|1|52|C|4582
6HCF|1|52|C|4583
6HCF|1|52|A|4584
6HCF|1|52|U|4585
6HCF|1|52|G|4586
*
6HCF|1|52|C|4716
6HCF|1|52|A|4717
6HCF|1|52|G|4718
6HCF|1|52|G|4719
6HCF|1|52|C|4720
6HCF|1|52|G|4721
6HCF|1|52|G|4722
6HCF|1|52|A|4723
6HCF|1|52|A|4724

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13