IL_6HCF_267

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCUCAGUAC*GGAACCGCA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|U|4594
6HCF|1|52|G|4595
6HCF|1|52|C|4596
6HCF|1|52|U|4597
6HCF|1|52|C|4598
6HCF|1|52|A|4599
6HCF|1|52|G|4600
6HCF|1|52|U|4601
6HCF|1|52|A|4602
6HCF|1|52|C|4603
*
6HCF|1|52|G|4608
6HCF|1|52|G|4609
6HCF|1|52|A|4610
6HCF|1|52|A|4611
6HCF|1|52|C|4612
6HCF|1|52|C|4613
6HCF|1|52|G|4614
6HCF|1|52|C|4615
6HCF|1|52|A|4616

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain H3

uL6

Chain V3

Ribosomal protein L23

Chain k1

ATP binding cassette subfamily E member 1

Chain m3

eL40