IL_6HCF_275

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUUCGUACG*UUGAAAGUCAGCC

Length

24 nucleotides

Bulged bases

6HCF|1|52|G|5041, 6HCF|1|52|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|4999
6HCF|1|52|G|5000
6HCF|1|52|U|5001
6HCF|1|52|U|5002
6HCF|1|52|U|5003
6HCF|1|52|C|5004
6HCF|1|52|G|5005
6HCF|1|52|U|5006
6HCF|1|52|A|5007
6HCF|1|52|C|5008
6HCF|1|52|G|5009
*
6HCF|1|52|U|5039
6HCF|1|52|U|5040
6HCF|1|52|G|5041
6HCF|1|52|A|5042
6HCF|1|52|A|5043
6HCF|1|52|A|5044
6HCF|1|52|G|5045
6HCF|1|52|U|5046
6HCF|1|52|C|5047
6HCF|1|52|A|5048
6HCF|1|52|G|5049
6HCF|1|52|C|5050
6HCF|1|52|C|5051

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain W3

eL24

Chain d3

eL31