IL_6HCF_286

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGGG*CGAUUCCG

Length

13 nucleotides

Bulged bases

6HCF|1|A1|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|C|409
6HCF|1|A1|G|410
6HCF|1|A1|G|411
6HCF|1|A1|G|412
6HCF|1|A1|G|413
*
6HCF|1|A1|C|424
6HCF|1|A1|G|425
6HCF|1|A1|A|426
6HCF|1|A1|U|427
6HCF|1|A1|U|428
6HCF|1|A1|C|429
6HCF|1|A1|C|430
6HCF|1|A1|G|431

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Y1

uS12