IL_6HCF_294

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGGA*UUUUCAUU

Length

13 nucleotides

Bulged bases

6HCF|1|A1|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|A|922
6HCF|1|A1|G|923
6HCF|1|A1|G|924
6HCF|1|A1|G|925
6HCF|1|A1|A|926
*
6HCF|1|A1|U|1015
6HCF|1|A1|U|1016
6HCF|1|A1|U|1017
6HCF|1|A1|U|1018
6HCF|1|A1|C|1019
6HCF|1|A1|A|1020
6HCF|1|A1|U|1021
6HCF|1|A1|U|1022

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

uS15

Chain X1

Ribosomal protein S15a

Chain c1

40S ribosomal protein S27