IL_6HCF_299

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUAG*CUUCU

Length

10 nucleotides

Bulged bases

6HCF|1|A1|C|1403, 6HCF|1|A1|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_299 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.24

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|A|1402
6HCF|1|A1|C|1403
6HCF|1|A1|U|1404
6HCF|1|A1|A|1405
6HCF|1|A1|G|1406
*
6HCF|1|A1|C|1440
6HCF|1|A1|U|1441
6HCF|1|A1|U|1442
6HCF|1|A1|C|1443
6HCF|1|A1|U|1444

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein S16

Chain V1

uS10

Chain h1

RACK1