IL_6HCF_305

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUUG*UAGAG

Length

11 nucleotides

Bulged bases

6HCF|1|A1|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|C|1717
6HCF|1|A1|G|1718
6HCF|1|A1|A|1719
6HCF|1|A1|U|1720
6HCF|1|A1|U|1721
6HCF|1|A1|G|1722
*
6HCF|1|A1|U|1812
6HCF|1|A1|A|1813
6HCF|1|A1|G|1814
6HCF|1|A1|A|1815
6HCF|1|A1|G|1816

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 52

Large subunit ribosomal RNA; LSU rRNA

Chain V3

Ribosomal protein L23

Chain Y1

uS12

Chain n3

eL41