IL_6HCF_306

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUCG*UGAGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|A1|C|1742
6HCF|1|A1|G|1743
6HCF|1|A1|G|1744
6HCF|1|A1|A|1745
6HCF|1|A1|U|1746
6HCF|1|A1|C|1747
6HCF|1|A1|G|1748
*
6HCF|1|A1|U|1786
6HCF|1|A1|G|1787
6HCF|1|A1|A|1788
6HCF|1|A1|G|1789
6HCF|1|A1|A|1790
6HCF|1|A1|A|1791
6HCF|1|A1|G|1792

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6

Chain J1

eS8

Chain W3

eL24