IL_6HCF_311
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGACCGAUAGUCAACAAGUACCGUAAGGGAAAG*CUCGGCU
- Length
- 40 nucleotides
- Bulged bases
- 6HCF|1|52|A|349, 6HCF|1|52|U|354, 6HCF|1|52|A|362, 6HCF|1|82|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|A|347
6HCF|1|52|G|348
6HCF|1|52|A|349
6HCF|1|52|C|350
6HCF|1|52|C|351
6HCF|1|52|G|352
6HCF|1|52|A|353
6HCF|1|52|U|354
6HCF|1|52|A|355
6HCF|1|52|G|356
6HCF|1|52|U|357
6HCF|1|52|C|358
6HCF|1|52|A|359
6HCF|1|52|A|360
6HCF|1|52|C|361
6HCF|1|52|A|362
6HCF|1|52|A|363
6HCF|1|52|G|364
6HCF|1|52|U|365
6HCF|1|52|A|366
6HCF|1|52|C|367
6HCF|1|52|C|368
6HCF|1|52|G|369
6HCF|1|52|U|370
6HCF|1|52|A|371
6HCF|1|52|A|372
6HCF|1|52|G|373
6HCF|1|52|G|374
6HCF|1|52|G|375
6HCF|1|52|A|376
6HCF|1|52|A|377
6HCF|1|52|A|378
6HCF|1|52|G|379
*
6HCF|1|82|C|21
6HCF|1|82|U|22
6HCF|1|82|C|23
6HCF|1|82|G|24
6HCF|1|82|G|25
6HCF|1|82|C|26
6HCF|1|82|U|27
Current chains
- Chain 52
- 28S ribosomal RNA
- Chain 82
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain C3
- uL4
- Chain L3
- eL13
- Chain Y3
- Ribosomal protein L26
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
Coloring options: