IL_6HCF_316

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CACC*GGGAGGUUCUCUCGG

Length

19 nucleotides

Bulged bases

6HCF|1|52|A|1222, 6HCF|1|52|G|1223, 6HCF|1|52|G|1224, 6HCF|1|52|U|1225, 6HCF|1|52|U|1226, 6HCF|1|52|C|1227, 6HCF|1|52|U|1228, 6HCF|1|52|C|1229, 6HCF|1|52|U|1230, 6HCF|1|52|C|1231, 6HCF|1|52|G|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|1077
6HCF|1|52|A|1078
6HCF|1|52|C|1079
6HCF|1|52|C|1080
*
6HCF|1|52|G|1219
6HCF|1|52|G|1220
6HCF|1|52|G|1221
6HCF|1|52|A|1222
6HCF|1|52|G|1223
6HCF|1|52|G|1224
6HCF|1|52|U|1225
6HCF|1|52|U|1226
6HCF|1|52|C|1227
6HCF|1|52|U|1228
6HCF|1|52|C|1229
6HCF|1|52|U|1230
6HCF|1|52|C|1231
6HCF|1|52|G|1232
6HCF|1|52|G|1233

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain F3

uL30