IL_6HCF_325

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGAAG*CCCUUGAAAAUCC

Length

20 nucleotides

Bulged bases

6HCF|1|52|A|2598, 6HCF|1|52|C|2739, 6HCF|1|52|U|2740, 6HCF|1|52|U|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|2596
6HCF|1|52|G|2597
6HCF|1|52|A|2598
6HCF|1|52|G|2599
6HCF|1|52|A|2600
6HCF|1|52|A|2601
6HCF|1|52|G|2602
*
6HCF|1|52|C|2737
6HCF|1|52|C|2738
6HCF|1|52|C|2739
6HCF|1|52|U|2740
6HCF|1|52|U|2741
6HCF|1|52|G|2742
6HCF|1|52|A|2743
6HCF|1|52|A|2744
6HCF|1|52|A|2745
6HCF|1|52|A|2746
6HCF|1|52|U|2747
6HCF|1|52|C|2748
6HCF|1|52|C|2749

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain g3

eL34

Chain p3

eL43