IL_6HCF_329
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAUGUCAAAGU*AAUGAAGCGC
- Length
- 22 nucleotides
- Bulged bases
- 6HCF|1|52|A|3711, 6HCF|1|52|A|3712, 6HCF|1|52|U|3713
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|3710
6HCF|1|52|A|3711
6HCF|1|52|A|3712
6HCF|1|52|U|3713
6HCF|1|52|G|3714
6HCF|1|52|U|3715
6HCF|1|52|C|3716
6HCF|1|52|A|3717
6HCF|1|52|A|3718
6HCF|1|52|A|3719
6HCF|1|52|G|3720
6HCF|1|52|U|3721
*
6HCF|1|52|A|3732
6HCF|1|52|A|3733
6HCF|1|52|U|3734
6HCF|1|52|G|3735
6HCF|1|52|A|3736
6HCF|1|52|A|3737
6HCF|1|52|G|3738
6HCF|1|52|C|3739
6HCF|1|52|G|3740
6HCF|1|52|C|3741
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain A3
- Ribosomal protein L8
- Chain i3
- 60S ribosomal protein L36
- Chain o3
- eL42
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