IL_6HCF_339

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACAUUUGGUGUAUG*CGAAGCUACCAU

Length

26 nucleotides

Bulged bases

6HCF|1|52|U|4634, 6HCF|1|52|U|4636, 6HCF|1|52|C|4670, 6HCF|1|52|C|4671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|A|4624
6HCF|1|52|C|4625
6HCF|1|52|A|4626
6HCF|1|52|U|4627
6HCF|1|52|U|4628
6HCF|1|52|U|4629
6HCF|1|52|G|4630
6HCF|1|52|G|4631
6HCF|1|52|U|4632
6HCF|1|52|G|4633
6HCF|1|52|U|4634
6HCF|1|52|A|4635
6HCF|1|52|U|4636
6HCF|1|52|G|4637
*
6HCF|1|52|C|4662
6HCF|1|52|G|4663
6HCF|1|52|A|4664
6HCF|1|52|A|4665
6HCF|1|52|G|4666
6HCF|1|52|C|4667
6HCF|1|52|U|4668
6HCF|1|52|A|4669
6HCF|1|52|C|4670
6HCF|1|52|C|4671
6HCF|1|52|A|4672
6HCF|1|52|U|4673

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23

Chain W3

eL24

Chain d3

eL31