IL_6HCF_342
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGCCUCGGAUAGC*GUGCGGAGAGCC
- Length
- 25 nucleotides
- Bulged bases
- 6HCF|1|52|C|4757, 6HCF|1|52|U|4758, 6HCF|1|52|A|4764, 6HCF|1|52|G|4870, 6HCF|1|52|C|4871, 6HCF|1|52|G|4873, 6HCF|1|52|A|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|G|4754
6HCF|1|52|G|4755
6HCF|1|52|C|4756
6HCF|1|52|C|4757
6HCF|1|52|U|4758
6HCF|1|52|C|4759
6HCF|1|52|G|4760
6HCF|1|52|G|4761
6HCF|1|52|A|4762
6HCF|1|52|U|4763
6HCF|1|52|A|4764
6HCF|1|52|G|4765
6HCF|1|52|C|4766
*
6HCF|1|52|G|4868
6HCF|1|52|U|4869
6HCF|1|52|G|4870
6HCF|1|52|C|4871
6HCF|1|52|G|4872
6HCF|1|52|G|4873
6HCF|1|52|A|4874
6HCF|1|52|G|4875
6HCF|1|52|A|4876
6HCF|1|52|G|4877
6HCF|1|52|C|4878
6HCF|1|52|C|4879
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain E3
- 60S ribosomal protein L6
- Chain H3
- uL6
- Chain M3
- Ribosomal protein L14
- Chain O3
- uL13
- Chain S3
- eL20
- Chain f3
- eL33
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