IL_6HCF_351

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6HCF|1|A1|A|555

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_351 not in the Motif Atlas

Homologous match to IL_8P9A_399

Geometric discrepancy: 0.4891

The information below is about IL_8P9A_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6HCF|1|A1|A|529
6HCF|1|A1|U|530
*
6HCF|1|A1|A|554
6HCF|1|A1|A|555
6HCF|1|A1|U|556

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain f1

40S ribosomal protein S30