IL_6HCJ_001
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUC*GUC
- Length
- 7 nucleotides
- Bulged bases
- 6HCJ|1|51|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_001 not in the Motif Atlas
- Geometric match to IL_2H1M_003
- Geometric discrepancy: 0.2576
- The information below is about IL_2H1M_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- Isolated cWH basepair
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
6HCJ|1|51|G|11
6HCJ|1|51|A|12
6HCJ|1|51|U|13
6HCJ|1|51|C|14
*
6HCJ|1|81|G|143
6HCJ|1|81|U|144
6HCJ|1|81|C|145
Current chains
- Chain 51
- 28S ribosomal RNA
- Chain 81
- 5.8S ribosomal RNA
Nearby chains
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
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