IL_6HCJ_002
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_002 not in the Motif Atlas
- Geometric match to IL_4J50_001
- Geometric discrepancy: 0.2468
- The information below is about IL_4J50_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- Isolated cWH basepair
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
6HCJ|1|51|G|16
6HCJ|1|51|A|17
6HCJ|1|51|C|18
*
6HCJ|1|81|G|139
6HCJ|1|81|C|140
6HCJ|1|81|C|141
Current chains
- Chain 51
- 28S ribosomal RNA
- Chain 81
- 5.8S ribosomal RNA
Nearby chains
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain h3
- uL29
Coloring options: