3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AU*AAAUGU
Length
8 nucleotides
Bulged bases
6HCJ|1|51|U|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HCJ_005 not in the Motif Atlas
Geometric match to IL_5TBW_007
Geometric discrepancy: 0.3719
The information below is about IL_5TBW_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_19724.3
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

6HCJ|1|51|A|121
6HCJ|1|51|U|122
*
6HCJ|1|51|A|147
6HCJ|1|51|A|148
6HCJ|1|51|A|149
6HCJ|1|51|U|150
6HCJ|1|51|G|151
6HCJ|1|51|U|152

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain 81
5.8S ribosomal RNA; 5.8S rRNA
Chain G3
eL8
Chain N3
Ribosomal protein L15

Coloring options:


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