IL_6HCJ_005
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AU*AAAUGU
- Length
- 8 nucleotides
- Bulged bases
- 6HCJ|1|51|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_005 not in the Motif Atlas
- Geometric match to IL_5TBW_007
- Geometric discrepancy: 0.3719
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6HCJ|1|51|A|121
6HCJ|1|51|U|122
*
6HCJ|1|51|A|147
6HCJ|1|51|A|148
6HCJ|1|51|A|149
6HCJ|1|51|U|150
6HCJ|1|51|G|151
6HCJ|1|51|U|152
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 81
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G3
- eL8
- Chain N3
- Ribosomal protein L15
Coloring options: