IL_6HCJ_006

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CGCG

Length

7 nucleotides

Bulged bases

6HCJ|1|51|C|143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_006 not in the Motif Atlas

Homologous match to IL_8C3A_008

Geometric discrepancy: 0.3204

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCJ|1|51|C|125
6HCJ|1|51|C|126
6HCJ|1|51|G|127
*
6HCJ|1|51|C|141
6HCJ|1|51|G|142
6HCJ|1|51|C|143
6HCJ|1|51|G|144

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain X3

uL23

Chain h3

uL29