IL_6HCJ_013

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCC*GGC

Length

7 nucleotides

Bulged bases

6HCJ|1|51|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_013 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.2323

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6HCJ|1|51|G|199
6HCJ|1|51|U|200
6HCJ|1|51|C|201
6HCJ|1|51|C|202
*
6HCJ|1|51|G|213
6HCJ|1|51|G|214
6HCJ|1|51|C|215

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Y3

Ribosomal protein L26

Chain e3

eL32