IL_6HCJ_018

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_018 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2497

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6HCJ|1|51|A|427
6HCJ|1|51|G|428
*
6HCJ|1|81|C|6
6HCJ|1|81|U|7
6HCJ|1|81|U|8

Current chains

Chain 51

28S ribosomal RNA

Chain 81

5.8S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain e3

eL32

Chain f3

eL33