IL_6HCJ_020

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGC*GUC

Length

7 nucleotides

Bulged bases

6HCJ|1|51|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_020 not in the Motif Atlas

Geometric match to IL_5ED2_004

Geometric discrepancy: 0.194

The information below is about IL_5ED2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCJ|1|51|G|448
6HCJ|1|51|C|449
6HCJ|1|51|G|450
6HCJ|1|51|C|451
*
6HCJ|1|51|G|1296
6HCJ|1|51|U|1297
6HCJ|1|51|C|1298

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain e3

eL32

Chain f3

eL33