IL_6HCJ_023

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6HCJ|1|51|G|666, 6HCJ|1|51|A|667, 6HCJ|1|51|C|668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_023 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.2285

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6HCJ|1|51|G|487
6HCJ|1|51|G|488
*
6HCJ|1|51|C|665
6HCJ|1|51|G|666
6HCJ|1|51|A|667
6HCJ|1|51|C|668
6HCJ|1|51|C|669

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28