IL_6HCJ_023
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GG*CGACC
- Length
- 7 nucleotides
- Bulged bases
- 6HCJ|1|51|G|666, 6HCJ|1|51|A|667, 6HCJ|1|51|C|668
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCJ_023 not in the Motif Atlas
- Geometric match to IL_5XWP_001
- Geometric discrepancy: 0.2285
- The information below is about IL_5XWP_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_71421.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
6HCJ|1|51|G|487
6HCJ|1|51|G|488
*
6HCJ|1|51|C|665
6HCJ|1|51|G|666
6HCJ|1|51|A|667
6HCJ|1|51|C|668
6HCJ|1|51|C|669
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain C3
- uL4
- Chain Q3
- eL18
- Chain r3
- eL28
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