IL_6HCJ_031

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCG*CCCGG

Length

9 nucleotides

Bulged bases

6HCJ|1|51|C|738, 6HCJ|1|51|C|738|||A, 6HCJ|1|51|C|924, 6HCJ|1|51|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|737
6HCJ|1|51|C|738
6HCJ|1|51|C|738|||A
6HCJ|1|51|G|739
*
6HCJ|1|51|C|923
6HCJ|1|51|C|924
6HCJ|1|51|C|925
6HCJ|1|51|G|926
6HCJ|1|51|G|927

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain M3

Ribosomal protein L14