IL_6HCJ_039

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

6HCJ|1|51|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_039 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2923

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6HCJ|1|51|G|1360
6HCJ|1|51|G|1361
*
6HCJ|1|51|C|1376
6HCJ|1|51|G|1377
6HCJ|1|51|C|1378
6HCJ|1|51|C|1379

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain N3

Ribosomal protein L15

Chain a3

uL15