IL_6HCJ_041

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6HCJ|1|51|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_041 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.2454

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6HCJ|1|51|C|1467
6HCJ|1|51|C|1468
*
6HCJ|1|51|G|1496
6HCJ|1|51|A|1497
6HCJ|1|51|G|1498

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain Q3

eL18

Chain a3

uL15

Chain b3

eL29