IL_6HCJ_048

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGCCA*UGGUGGAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|51|C|1551
6HCJ|1|51|G|1552
6HCJ|1|51|A|1553
6HCJ|1|51|A|1554
6HCJ|1|51|G|1555
6HCJ|1|51|C|1556
6HCJ|1|51|C|1557
6HCJ|1|51|A|1558
*
6HCJ|1|51|U|1569
6HCJ|1|51|G|1570
6HCJ|1|51|G|1571
6HCJ|1|51|U|1572
6HCJ|1|51|G|1573
6HCJ|1|51|G|1574
6HCJ|1|51|A|1575
6HCJ|1|51|G|1576

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain R3

eL19

Chain p3

eL43