IL_6HCJ_053

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAGU*AUGC

Length

9 nucleotides

Bulged bases

6HCJ|1|51|G|1724

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_053 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3983

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6HCJ|1|51|G|1721
6HCJ|1|51|C|1722
6HCJ|1|51|A|1723
6HCJ|1|51|G|1724
6HCJ|1|51|U|1725
*
6HCJ|1|51|A|1838
6HCJ|1|51|U|1839
6HCJ|1|51|G|1840
6HCJ|1|51|C|1841

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain F3

uL30

Chain T3

eL21

Chain b3

eL29