3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CACUU*AACUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|51|C|1857
6HCJ|1|51|A|1858
6HCJ|1|51|C|1859
6HCJ|1|51|U|1860
6HCJ|1|51|U|1861
*
6HCJ|1|51|A|1873
6HCJ|1|51|A|1874
6HCJ|1|51|C|1875
6HCJ|1|51|U|1876
6HCJ|1|51|G|1877

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain 71
5S ribosomal RNA; 5S rRNA
Chain F3
uL30
Chain I3
60S ribosomal protein L10
Chain b3
eL29

Coloring options:

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