IL_6HCJ_066

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6HCJ|1|51|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_066 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.3467

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6HCJ|1|51|G|2001
6HCJ|1|51|A|2002
6HCJ|1|51|G|2003
6HCJ|1|51|U|2004
6HCJ|1|51|G|2005
*
6HCJ|1|51|C|2014
6HCJ|1|51|U|2015
6HCJ|1|51|C|2016

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain t3

uL10

Chain u3

Ribosomal protein L12