IL_6HCJ_070

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAG*CGG

Length

7 nucleotides

Bulged bases

6HCJ|1|51|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_070 not in the Motif Atlas

Homologous match to IL_8C3A_064

Geometric discrepancy: 0.5118

The information below is about IL_8C3A_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCJ|1|51|C|2311
6HCJ|1|51|U|2312
6HCJ|1|51|A|2313
6HCJ|1|51|G|2314
*
6HCJ|1|51|C|2325
6HCJ|1|51|G|2326
6HCJ|1|51|G|2327

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain 81

5.8S ribosomal RNA; 5.8S rRNA

Chain e3

eL32

Chain r3

eL28