3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGAGUGG*CGCC
Length
11 nucleotides
Bulged bases
6HCJ|1|51|G|2544, 6HCJ|1|51|U|2545
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCJ|1|51|G|2541
6HCJ|1|51|G|2542
6HCJ|1|51|A|2543
6HCJ|1|51|G|2544
6HCJ|1|51|U|2545
6HCJ|1|51|G|2546
6HCJ|1|51|G|2547
*
6HCJ|1|51|C|2772
6HCJ|1|51|G|2773
6HCJ|1|51|C|2774
6HCJ|1|51|C|2775

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain 81
5.8S ribosomal RNA; 5.8S rRNA
Chain g3
eL34
Chain k3
eL38

Coloring options:

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