IL_6HCJ_081

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6HCJ|1|51|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_081 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1701

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6HCJ|1|51|C|2867
6HCJ|1|51|G|2868
6HCJ|1|51|U|2869
6HCJ|1|51|A|2870
6HCJ|1|51|A|2871
6HCJ|1|51|C|2872
*
6HCJ|1|51|G|2877
6HCJ|1|51|G|2878
6HCJ|1|51|A|2879
6HCJ|1|51|U|2880
6HCJ|1|51|A|2881
6HCJ|1|51|A|2882
6HCJ|1|51|G|2883

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain n3

eL41

Chain p3

eL43