IL_6HCJ_082

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCJ_082 not in the Motif Atlas

Homologous match to IL_5TBW_079

Geometric discrepancy: 0.1836

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCJ|1|51|G|2889
6HCJ|1|51|C|2890
6HCJ|1|51|U|2891
*
6HCJ|1|51|A|3610
6HCJ|1|51|A|3611
6HCJ|1|51|C|3612

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain J2

eS8

Chain R3

eL19